FastQCFastQC Report
Sun 21 May 2023
EGAF00007926820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461606
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37260.8071818823845445No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG20720.4488676490340247No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18940.4103066251305226No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18300.3964419873225218No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15900.34444959554251897No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT15390.33340121228926833No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT14850.32170292413876767No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14280.309354731091017No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14180.3071883814335169No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA11890.2575789742767642No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10340.2240005545855123No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9800.21230226643501166No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8490.18392308592176013No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8380.18154010129850998No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC8310.1800236565382599No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8250.17872384674375982No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8060.1746077823945096No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7510.16269285927825894No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6870.1488282214702582No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6830.14796168160725814No Hit
GGCCGCTCCGACGCGTCCCATGGCCAGTCTG6550.1418959025662578No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6200.13431367876500738No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC6180.13388040883350738No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6170.13366377386775735No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5960.1291144395870071No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5590.12109894585425665No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5480.11871596123100651No Hit
TCTCTGCAACAGGTAAGCGGCCACGGTTCCG5470.11849932626525651No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5240.11351672205300624No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5200.11265018219000619No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5130.1111337374297561No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT4950.1072343080462559No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)