FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926822

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926822
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491442
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41110.8365178393381112No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32530.6619295868078023No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24740.5034164764102377No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23150.4710627093329427No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15900.3235376707729498No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15350.31234611612357105No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12150.24723161634536728No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9970.20287236337146602No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9890.2012445008770109No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9660.19656439620545255No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7510.1528155916669719No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6990.1422344854530138No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6790.13816482921687603No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG6710.13653696672242097No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6470.13165337923905568No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6440.13104293080363502No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6360.12941506830917993No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6050.12310710114316645No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5960.12127575583690446No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5740.11679913397715294No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5640.11476430585908408No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5070.10316578558609155No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4940.10052050903260203No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)