FastQCFastQC Report
Sun 21 May 2023
EGAF00007926823

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926823
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498177
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23930.48035136106243365No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19880.3990549543636097No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16490.3310068509786682No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15280.3067182949032171No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14750.2960795058784328No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14390.28885315861631505No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12740.25573240033160904No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9090.18246526836847146No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG8470.17001989252815766No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8240.16540305955513804No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7120.14292109029521635No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7090.1423188946900399No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT6870.1379027935854124No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6290.12626034521866725No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6090.1222457078508241No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5810.11662521553584368No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5690.1142164331151378No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5480.11000106387890247No Hit
TTGCAGCGGAGACAGGGTGATTTCAACACGGCGGTTCTGCGCTT5190.1041798396955299No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5160.10357764409035343No Hit

[OK]Adapter Content

Adapter graph