FastQCFastQC Report
Sun 21 May 2023
EGAF00007926824

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926824
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498177
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39690.7967047856484744No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35490.7123974009237681No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25570.5132713874787475No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24060.4829608753515317No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15890.31896293887513877No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15450.3101307366658838No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12890.25874337835749145No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9720.19511137607717738No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9600.1927025936564715No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9530.1912974705777264No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7640.15335914745160856No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7480.15014743755733403No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7420.14894304634698108No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG7190.14432621337396148No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6640.13328596061239278No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6600.13248303313882415No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6340.12726400456062806No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6280.1260596133502751No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5860.11762887487780448No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5610.11261057816800053No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5470.10980033201051032No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5250.10538423090588286No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)