FastQCFastQC Report
Wed 31 May 2023
EGAF00007926828

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926828
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462395
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGAACAGAAACAGCTGCTGCAGGGTGACG19030.4115528930892419No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17700.38278960628899533No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17270.3734901977746299No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG15720.3399690740600569No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG13650.2952021540025303No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12190.2636274181165454No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG12130.26232982623081996No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC9440.2041544566874642No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8700.18815082343018413No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7820.16911947577287817No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7600.16436163885855168No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7450.16111765914423815No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7340.15873874068707491No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7090.1533321078298857No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7070.15289957720131056No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7060.152683311887023No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6800.14706041371554623No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6750.1459790871441084No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6200.13408449485829216No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6000.1297591885725408No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5800.12543388228678942No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5640.12197363725818834No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5270.11397182062954833No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5200.11245796342953536No Hit
CGCCTGCTGGAATGCCGTTTTCAGCAGGAAC5070.10964651434379696No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)