FastQCFastQC Report
Wed 31 May 2023
EGAF00007926829

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926829
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498038
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT14550.2921463824045555No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT12690.25479983455077726No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10960.22006352928892978No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8450.16966576847549786No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT7970.16002794967452283No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7910.15882322232440094No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7420.14898461563173893No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG6270.1258940080877363No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5710.11464988615326542No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG5220.10481127946060341No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5210.10461049156891641No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)