FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926830

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926830
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498038
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT14580.29274874607961643No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13690.2748786237194752No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13680.2746778358277882No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT11880.2385360153241319No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9910.19898080066179688No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8160.16384291961657546No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8000.16063031334958378No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7600.15259879768210458No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6830.13713813002220715No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6270.1258940080877363No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5910.118665643987005No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5220.10481127946060341No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)