FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926831

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926831
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476272
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT13610.2857610777034972No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT12220.25657607417610107No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11040.23180031578593743No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT8270.17364027278529917No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7470.15684314845298483No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7300.15327375953236805No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7300.15327375953236805No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG5760.12093929519266301No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5310.11149091275573621No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)