FastQCFastQC Report
Wed 31 May 2023
EGAF00007926832

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926832
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476272
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38460.8075217522760103No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT13770.28912050256996No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13580.2851311855410354No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT11250.23620956092316997No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8410.17657976954345417No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7720.16209224980683307No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA7600.15957268115698592No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7220.15159404709913663No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6640.13941613195820873No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5930.1245086841132798No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5620.11799979843450802No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)