FastQCFastQC Report
Sun 21 May 2023
EGAF00007926834

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926834
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504046
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24670.4894394559226738No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18980.37655293366081666No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17300.3432226423778782No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16790.33310451823841475No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13900.27576848144812177No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13380.2654519627176885No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12110.24025584966451471No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10930.21684528793006985No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8720.17300008332572822No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7990.15851727818492756No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7350.14582002436285577No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7270.1442328676350968No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6850.13590029481436217No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6580.13054364085817563No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6450.1279645111755673No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6150.12201267344647115No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6100.12102070049162178No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6000.11903675458192309No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5950.11804478162707373No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5740.1138784952167064No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5580.11070418176118847No Hit
ATGAGCACCAACCCGAAACCGCAGCGTAAAA5070.10058605762172501No Hit

[OK]Adapter Content

Adapter graph