FastQCFastQC Report
Wed 31 May 2023
EGAF00007926842

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926842
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445029
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24310.5462565360909065No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20000.44940891492464535No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC18330.41188327052843743No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC18010.40469272788964317No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16480.37031294589790775No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC16000.3595271319397163No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC15900.3572800873650931No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG15280.3433484110024291No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11920.2678477132950886No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9580.21526687024890512No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA8580.19279642450267287No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8300.18650469969372782No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8080.18156120162955672No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT7080.15909075588332447No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6740.15145080432960548No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6280.14111439928633865No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6230.13999087699902704No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5660.12718272292367463No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5570.12516038280651373No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5430.12201452040204121No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5250.1179698401677194No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5240.11774513571025708No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC4890.1098804796990758No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4820.10830754849683953No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4650.10448757271998003No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4590.1031393459752061No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4560.10246523260281915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)