FastQCFastQC Report
Sun 21 May 2023
EGAF00007926844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423182
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34160.8072176982952961No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22670.5357033144131839No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18010.4255852092007694No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC16760.3960470908497999No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16480.38943055233918267No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC15990.3778516099456026No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC15070.356111554839289No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC14520.3431147827648624No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13530.3197205930308945No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9330.2204725153716368No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA8040.1899891772334362No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7780.18384524861643453No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7550.17841023483985613No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT6830.16139627866969766No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6130.14485493239315472No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6000.14178296808465388No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5460.12902250095703502No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5110.12075182781876356No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4980.11767986351026273No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4910.11602572888260843No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4780.11295376457410759No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4670.11035441015922229No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4660.11011810521241452No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4590.10846397058476022No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC4370.10326526175498958No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4360.10302895680818182No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4320.10208373702095079No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4310.10184743207414305No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)