FastQCFastQC Report
Sun 21 May 2023
EGAF00007926846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452314
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23980.5301626746021569No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20640.456320166963658No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC18500.40900790159048805No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17930.39640603651445677No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC17930.39640603651445677No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC17310.38269874467737014No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC15440.3413557838138992No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG15310.33848167423515524No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12860.2843157629434419No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9940.2197588400978082No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8540.18880689078825771No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA8350.18460626909624728No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8060.17819479388212614No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT7690.17001463585031637No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6840.15122238091237503No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6450.1426000521761431No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6440.14237896682393203No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5790.1280084189302122No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5570.12314454118156856No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5530.12226019977272426No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5260.11629089526302525No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5150.11385895638870343No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5140.11363787103649235No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5130.11341678568428128No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4920.1087739932878487No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4810.10634205441352687No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC4720.10435228624362722No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)