FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926848

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926848
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466069
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14940.3205533944544692No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14820.31797866839459393No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12460.2673423892170473No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9420.20211599570020747No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8920.19138797045072725No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7460.16006213672224498No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7440.15963301571226576No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6700.14375553834303506No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6680.14332641733305584No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5420.11629179370436567No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5320.11414618865446963No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5260.11285882562453199No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4960.10642201047484384No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)