FastQCFastQC Report
Sun 21 May 2023
EGAF00007926850

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926850
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475365
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14570.30650132003828634No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14250.2997696506894702No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14060.2957727220136106No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9490.19963606912582962No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8900.1872245537639498No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7620.16029787636868512No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7580.1594564177000831No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7310.15377657168701944No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6920.14557234966814972No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5680.11948713094148705No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5290.11128290892261736No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5210.10959999158541331No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5170.1087585329168113No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4920.10349941623804867No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)