FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926851

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926851
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446517
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22930.513530279922153No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19220.4304427379024762No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18920.4237240687364647No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15260.34175630491112324No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14610.32719918838476475No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14590.3267512771070306No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11690.2618041418355852No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11500.2575489846971112No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10950.24523142455942326No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10170.22776288472779313No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9900.22171608247838268No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9640.21589323586783932No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9580.214549502034637No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG8830.19775282911960798No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8730.19551327273093747No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8360.18722691409285647No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG7960.17826868853817435No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7850.17580517651063676No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7560.16931046298349223No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7370.1650553058450182No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7090.15878454795674074No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6630.14848258856885627No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6430.14400347579151523No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6260.14019622993077532No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5700.12765471415422033No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT5530.12384746829348042No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG5430.12160791190480989No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG5210.11668088784973472No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4910.10996221868372312No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4790.1072747510173185No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG4750.10637892846185026No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4710.10548310590638207No Hit
CGGCAGCTTCTCAGTCGGCAGTTTGGACAGGGTTTCGGAACGCT4500.10078003749017395No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)