FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926852

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926852
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446517
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46861.0494561237310114No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18810.4212605567089271No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18740.4196928672368577No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15790.35362595377107703No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15130.3388448816058515No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13940.3121941605806722No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12200.2732258794178049No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12090.2707623673902673No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11790.2640436982242558No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11600.2597885410857817No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10530.23582528772700703No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10010.2241795945059203No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9940.2226119050338509No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9840.22037234864518035No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9810.21970048172857923No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9630.21566928022897225No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8990.20133611934148085No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG8550.1914820712313305No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8360.18722691409285647No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7930.1775968216215732No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7770.17401353139970033No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7690.17222188628876392No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6720.15049818931865977No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6460.14467534270811636No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6460.14467534270811636No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6110.1368368953477695No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5640.126310980321018No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG5540.12407142393234749No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG5280.1182485773218041No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4890.10951430740598903No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4890.10951430740598903No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4790.1072747510173185No Hit
CGTCTGGTCCGCCAGCACAACATTCAGGTGC4630.10369146079544564No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4600.10301959387884448No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)