FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926860

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926860
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454075
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20970.4618179816109674No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG11490.25304189836480756No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT10590.2332213841325772No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC10410.22925728128613113No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA9350.20591312007928203No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6900.15195727578043275No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC6810.14997522435720972No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG5650.12442878379122391No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5630.12398832791939657No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG5380.1184826295215548No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG5140.11319715905962671No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG4930.10857237240543963No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACCAG4900.10791168859769862No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG4830.10637009304630292No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT4640.10218576226394319No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)