FastQCFastQC Report
Sun 21 May 2023
EGAF00007926861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440284
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA10540.23939093857601002No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT10320.23439416376702307No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT10070.22871601057499252No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9280.2107730464881758No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG8720.19805398333802726No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8290.18828755984773465No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT6960.15807978486613186No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6740.15308301005714495No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA5490.12469224409699194No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG5010.11379018996829318No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAG4790.10879341515930625No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG4500.10220675745655078No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTG4440.10084400069046343No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)