FastQCFastQC Report
Wed 31 May 2023
EGAF00007926862

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926862
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440284
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20450.46447293110810295No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20200.4587947779160723No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG10460.23757392955456022No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC10230.23235002861789208No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT9460.21486131678643783No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA8730.19828110946570848No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC6760.1535372623125074No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6530.14831336137583923No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG5600.1271906315014854No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG5380.12219385669249846No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG5280.11992259541568624No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACCAG4750.10788491064858137No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG4710.10697640613785647No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT4530.10288813583959444No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC4450.10107112681814465No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG4410.10016262230741976No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)