FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926863

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926863
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486264
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA16950.3485760821282266No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG15730.3234868301992333No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG14710.3025105703897471No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT14390.2959297829985358No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCG12570.25850155471102115No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT11870.24410608229274633No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGG10990.2260089169669151No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT10560.21716598390997482No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA9180.18878633828537586No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCA9060.18631854301367157No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT8980.18467334616586875No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT8430.1733626178372242No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7520.15464850369346694No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7380.15176940920981194No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA6760.13901913363933996No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC6480.13326094467203No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6380.13120444861227645No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6160.12668015728081863No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC6070.12482931082704045No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5560.11434118092229735No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT5510.11331293289242059No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT5500.11310728328644522No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5480.1126959840744945No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA5450.11207903525656845No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG5310.10919994077291346No Hit
CACCAGCGGAACCAGGGACAGCTGCAGACGCGGAGGACCGG5260.1081716927430367No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5190.10673214550120923No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5140.10570389747133245No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5020.10323610219962819No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT4950.1017965549578007No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)