FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501600
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA17140.3417065390749601No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG16180.3225677830940989No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG15510.3092105263157895No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT14780.29465709728867623No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCG13370.26654704944178625No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT12610.25139553429027117No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGG11780.23484848484848483No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT11150.22228867623604467No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA9480.1889952153110048No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCA9320.18580542264752792No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT9160.18261562998405104No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT8980.17902711323763956No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT8200.1634768740031898No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7960.1586921850079745No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA6900.1375598086124402No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6890.13736044657097288No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6740.13437001594896333No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC6360.12679425837320574No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC6060.12081339712918661No Hit
CACCAGCGGAACCAGGGACAGCTGCAGACGCGGAGGACCGG5890.11742424242424242No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT5560.11084529505582137No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT5520.11004784688995214No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5450.10865231259968103No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5410.10785486443381179No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5400.10765550239234449No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA5270.10506379585326954No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGG5220.10406698564593303No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5140.10247208931419459No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5090.10147527910685805No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)