FastQCFastQC Report
Wed 31 May 2023
EGAF00007926866

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926866
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501600
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG39290.7832934609250398No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT20120.4011164274322169No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG14630.2916666666666667No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC14420.2874800637958533No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAACGC12900.257177033492823No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACCCG11850.23624401913875598No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC11630.2318580542264753No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTGGT9900.19736842105263158No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG9300.1854066985645933No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC9060.180622009569378No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC8540.17025518341307813No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT8480.16905901116427433No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT8000.1594896331738437No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC7260.14473684210526316No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7200.14354066985645933No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG7180.14314194577352474No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA7160.14274322169059012No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT6640.1323763955342903No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG6300.1255980861244019No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6230.12420255183413077No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC6060.12081339712918661No Hit
GTACACGGCCACACCCAGGGCCCGTGGGACCCG5910.11782296650717702No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5780.11523125996810207No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5680.11323763955342903No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5620.11204146730462519No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5600.11164274322169059No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5560.11084529505582137No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5530.11024720893141947No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5440.10845295055821372No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC5370.10705741626794259No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5270.10506379585326954No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5160.10287081339712918No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA5150.10267145135566189No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC5110.10187400318979266No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG5110.10187400318979266No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)