FastQCFastQC Report
Sun 21 May 2023
EGAF00007926867

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926867
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502262
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC17740.3532021136379021No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12340.24568850520246405No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT11640.2317515559608332No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10280.20467405457709323No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT9550.19013980751082105No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8400.16724339089957035No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6600.131405521421091No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5850.11647307580505792No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5670.11288928885720999No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG5560.11069919683352512No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT5260.1047262185871119No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT5210.1037307222127097No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)