FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502262
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG17260.343645348443641No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT15420.30701108186563986No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT13250.26380653921658415No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG12120.24130832115509432No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC10690.2128371248471913No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10410.20726234515053896No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9080.18078214159144032No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8510.1694334829232552No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6180.12304335187611247No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6120.12184875622682982No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC5780.11507938088089484No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC5260.1047262185871119No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5220.10392982148759015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)