FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926870

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926870
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500712
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG16640.33232676668424166No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT14920.29797568262793783No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT13140.26242630494176294No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG12300.24565019412356803No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC10250.20470849510297334No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10200.2037099170780808No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8770.1751505855661538No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8420.16816053939190592No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6240.12462253750659062No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6050.12082794101199892No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC5640.11263960120787997No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5330.10644841745354615No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC5320.10624870184856763No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT5280.1054498394286536No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)