FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491713
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23040.46856601310113827No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG16060.32661328864601913No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT14360.2920402755265775No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG12150.24709535847130337No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT11990.2438414278247677No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC10000.20337066540848017No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9720.19767628677704271No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8840.17977966822109645No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8310.169001022954447No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6350.1291403725343849No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC5510.11205723664007256No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC5120.10412578068914183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)