FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926878

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926878
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477529
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT26140.5474013096586804No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC11580.24249836135606423No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG10360.21695017475378459No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT9890.20710784057093914No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7870.164806744721263No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7620.1595714605814516No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5910.12376211706514159No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC5420.11350096015111123No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG4900.10261156914030353No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)