FastQCFastQC Report
Wed 31 May 2023
EGAF00007926881

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926881
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518735
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA13040.2513807628172381No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG12040.23210309695702044No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11360.21899428417207245No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9560.1842944856236807No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8470.16328182983604345No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8250.15904074334679555No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7890.1521007836371172No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5700.10988269540324058No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)