FastQCFastQC Report
Sun 21 May 2023
EGAF00007926883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506506
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA12620.24915795666783808No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG11860.23415319858007605No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11220.22151761282196064No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10210.2015770790474348No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8180.16149858047091248No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8020.15833968403138365No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8000.15794482197644252No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5190.10246670325721709No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)