FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926886

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926886
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469342
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT31750.6764789854732796No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22220.4734287577075991No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG16690.3556042288991823No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC13570.2891281837125167No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT12180.25951225332486755No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC9260.19729749308606517No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7620.1623549565135871No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7130.15191480839132232No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT5850.12464258472499798No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5440.11590695058187846No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG4900.10440148122264788No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)