FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926888

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926888
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486225
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT32400.6663581675150393No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG17500.3599156768985552No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC14860.30561982621214456No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT12850.26428093989408197No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC9720.1999074502545118No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7830.16103655714946782No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7540.15507224021800609No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5820.11969767083140521No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT5760.11846367422489588No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG5220.10735770476631189No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5150.10591804205871767No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)