FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926890

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926890
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471794
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT19710.41776707630872795No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT16400.3476093379737767No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15510.3287451726812973No Hit
TCTCTGCCGCTGATCGGCGAAGCTGACTGTCTG11090.23506021695909657No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC10890.23082107869112364No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10890.23082107869112364No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9230.19563623106694872No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC8500.18016337638884766No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7710.16341878023035478No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7660.16235899566336157No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCGTA7560.1602394265293751No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTGGT7510.15917964196238188No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7360.15600028826140222No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7120.15091332233983476No Hit
TGTCTGCACGAAAAATATGGTGGTCTGAACAAA6640.14073939049669984No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGGCC6630.14052743358330116No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC6390.13544046766173373No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6350.13459264000813914No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC6250.1324730708741527No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT5900.12505457890520016No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC5790.12272305285781505No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5790.12272305285781505No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG5540.11742413002284896No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA5430.11509260397546386No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAACGC5420.11488064706206523No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5340.11318499175487606No Hit
CCGCAGTGCGCCCTGATCCAGATCACCAAACGT5330.11297303484147743No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTAAC5300.11233716410128149No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5190.11000563805389642No Hit
GGTGCCGGCAAAGCACTGTCTGCAGTCAAAGAT4810.10195127534474793No Hit
GAAGCTGACTGCCTGCACGAAAAATACGGTGGT4790.10152736151795062No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGCCG4730.10025562003755875No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)