FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472695
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT19560.41379748040491227No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT17020.36006304276541956No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15880.33594601169887556No Hit
TCTCTGCCGCTGATCGGCGAAGCTGACTGTCTG11380.2407472048572547No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC11050.23376595902220246No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10240.21663017379071073No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9600.20309078792879132No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC8650.18299326204000466No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC8160.1726271697394726No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7670.16226107743894055No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTGGT7330.15506827869979586No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGGCC7330.15506827869979586No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7130.15083722061794602No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCGTA6780.14343286897470886No Hit
TGTCTGCACGAAAAATATGGTGGTCTGAACAAA6750.14279821026243136No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6510.13772094056421158No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC6320.13370143538645426No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6090.12883571859232698No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5990.12672018955140207No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC5890.12460466051047717No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5770.12206602566136728No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT5760.12185447275727478No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG5730.1212198140449973No Hit
CCGCAGTGCGCCCTGATCCAGATCACCAAACGT5250.11106527464855773No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5200.11000751012809529No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5110.10810353399126285No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAACGC5080.1074688752789854No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTAAC5080.1074688752789854No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5020.10619955785443046No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA4970.10514179333396799No Hit
GGTGCCGGCAAAGCACTGTCTGCAGTCAAAGAT4940.10450713462169052No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4820.10196849977258063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)