FastQCFastQC Report
Wed 31 May 2023
EGAF00007926893

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926893
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500901
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10630.21221758391378734No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9780.19524816281061527No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9370.18706291263143815No Hit
AGCGTCCGGGTTGCAGGACGCCAGCCAGTCAGCATCCTGTA8330.16630032681108642No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8210.16390464383181508No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6370.12717083814965432No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG6300.12577335641174603No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6180.12337767343247469No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5800.11579134399811539No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT5650.11279674027402621No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)