FastQCFastQC Report
Wed 31 May 2023
EGAF00007926894

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926894
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500901
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT22020.4396078266962933No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9220.18406830890734896No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9040.18047478443844195No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8650.17268881475581002No Hit
CTGATCACTCCGACCGCAGATGGTCAGACCCGC8650.17268881475581002No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7820.15611867414918318No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7800.15571939365263796No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7780.15532011315609273No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6990.1395485335425563No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT6650.13276076510128748No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6030.1203830697083855No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5460.10900357555684657No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5360.10700717307412044No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5040.10061868512939683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)