FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485490
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10210.21030299285258194No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9530.1962965251601475No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9180.18908731384786504No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8150.16787163484314815No Hit
AGCGTCCGGGTTGCAGGACGCCAGCCAGTCAGCATCCTGTA7910.16292817565758305No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6490.1336793754763229No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG6150.12667614163010568No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5930.122144637376671No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5700.11740715565717111No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT5420.11163978660734515No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5290.1089620795484974No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)