FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926896

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926896
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485490
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24340.5013491524027271No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT21170.4360542956600548No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8850.182290057467713No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC8710.17940637294280007No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8630.17775855321427836No Hit
CTGATCACTCCGACCGCAGATGGTCAGACCCGC8200.16890152217347423No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7660.15777873900595274No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7570.15592494181136585No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7350.15139343755793117No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6340.1305897134853447No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT6230.12832396135862736No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA5750.11843704298749717No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5170.10649034995571485No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5030.10360666543080188No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC4990.10278275556654103No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)