FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926897

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926897
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502554
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10320.2053510667510357No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9430.18764152707967702No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9410.18724355989605096No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8500.16913605304106621No Hit
AGCGTCCGGGTTGCAGGACGCCAGCCAGTCAGCATCCTGTA8370.16654926634749698No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7190.14306920251356073No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6380.1269515315767062No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG6260.12456372847494995No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5890.11720133557786826No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT5500.10944097549716049No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5460.10864504112990843No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5150.10247654978370485No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5030.1000887466819486No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)