FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502554
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT21790.4335852465605686No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9350.18604965834517287No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8960.1782892982644651No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC8930.17769234748902604No Hit
CTGATCACTCCGACCGCAGATGGTCAGACCCGC8740.1739116592445787No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8380.16674824993931No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8250.16416146324574077No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7610.15142651336970755No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6700.1333190065147228No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT6540.13013526904571449No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5910.11759930276149429No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA5810.1156094668433641No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5520.10983894268078655No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5460.10864504112990843No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5360.10665520521177824No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5360.10665520521177824No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG5230.104068418518209No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5170.10287451696733088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)