FastQCFastQC Report
Wed 31 May 2023
EGAF00007926903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507741
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA17390.3424974544108118No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG15300.30133473562308344No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA14560.28676037586092123No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT11660.22964464165785314No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG10560.2079800528222066No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8990.17705877602951112No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC8230.16209051465215532No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7700.15165212184952565No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7430.14633445004441242No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG7340.14456189277604134No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG7280.14338018793046062No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT6540.12880582816829841No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6230.12270035313279802No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6200.12210950071000766No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5900.11620097648210406No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGG5750.11324671436815227No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT5590.1100955014466037No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5460.10753514094784546No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5200.102414419950329No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)