FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507741
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG36370.7163100872295127No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG14850.29247194928122805No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11970.2357501166933535No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT10610.20896480686019053No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9640.18986057852330224No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9520.1874971688321408No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT8530.16799903888005893No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT8160.16071185899897783No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA7740.15243992507991277No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7620.15007651538875136No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7390.14554664681402527No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG7370.1451527451988317No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG7060.13904727016333132No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG6790.13372959835821807No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6550.12900277897589518No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6490.12782107413031446No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCTCT6160.12132169747962052No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5910.11639792728970084No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5460.10753514094784546No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5180.10202051833513544No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5150.10142966591234508No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT5110.10064186268195793No Hit

[OK]Adapter Content

Adapter graph