FastQCFastQC Report
Sun 21 May 2023
EGAF00007926905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508738
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA17150.3371086885587473No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA15500.3046754911172352No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG15090.29661633296510187No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG11940.23469841057676055No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT11670.22939116008633126No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9510.1869331561628972No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC8700.17101140469160941No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7870.15469652355436392No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG7440.1462442357362729No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7140.14034729074690705No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG7080.13916790174903387No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6670.13110874359690058No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT6190.12167363161391521No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6100.11990454811710548No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGG5870.11538355695859166No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5780.1136144734617819No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT5590.10987974163518352No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5410.10634157464156403No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)