FastQCFastQC Report
Wed 31 May 2023
EGAF00007926906

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926906
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508738
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG38940.7654234596196864No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG15630.3072308339459604No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG12320.24216787422995725No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT11950.2348949754097394No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG10110.1987270461416289No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT9160.18005338700863704No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9020.177301479346933No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7710.15155148622670217No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA7630.14997896756287127No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7510.14762018956712494No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7500.14742362473414605No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG7340.14427858740648428No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG6820.1340572160915835No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6710.131895002928816No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6500.12776714143625992No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG6390.12560492827349246No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCTCT6330.12442553927561927No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6000.11793889978731686No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5740.11282821412986646No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5720.11243508446390872No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5120.10064119448517704No Hit

[OK]Adapter Content

Adapter graph