FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926908

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926908
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492421
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG37170.7548418934204675No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22600.45895686820830145No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG14480.29405732086974357No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11320.22988459062468902No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT10830.21993375587150021No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9240.18764431248870378No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9170.18622276466681967No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT8270.16794572124259527No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7890.1602287473523672No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA7850.15941643431129054No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7730.15697949518806062No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG7400.15027791259917836No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7320.14865328651702506No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG7270.14763789521567927No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG6790.1378901387227596No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6430.13057932135306982No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6210.12611159962714832No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6160.12509620832580254No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCTCT6080.12347158224364924No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG4940.100320660572965No Hit

[OK]Adapter Content

Adapter graph