FastQCFastQC Report
Wed 31 May 2023
EGAF00007926909

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926909
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481621
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA12630.2622393957074131No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG12280.2549722707273977No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG11450.23773880291764687No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10950.22735719580333916No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA9880.20514055657872063No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8920.18520787091924978No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7930.1646522888329205No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGA7350.15260962458032354No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA7070.14679592459631122No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC7000.14534249960030812No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC6950.14430433888887736No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6450.13392273177456962No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG6450.13392273177456962No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC5790.12021901038368345No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT5760.11959611395682497No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC5540.11502820682652959No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC5450.11315951754595419No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG5370.11149846040766495No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5320.11046029969623418No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGC5280.10962977112708956No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5240.10879924255794493No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGT4970.10319317471621876No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4880.10132448543564339No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)