FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926911

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926911
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465451
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA13210.28381075558973984No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG12330.2649043615761917No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG11330.24341982292443243No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10480.22515796507043706No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA9900.21269693265241668No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8100.17402476307925002No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGA7710.1656457930050639No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7630.16392702991292316No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC6240.13406352118697779No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6160.13234475809483706No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA6100.13105568577573148No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6070.13041114961617872No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG5790.12439547879368612No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC5720.12289156108806298No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5710.12267671570154537No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT5690.1222470249285102No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5620.12074310722288706No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC5410.11623135410601762No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5150.11064537405656019No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC5100.10957114712397223No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGC4990.1072078478722787No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTT4830.10377032168799724No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)