FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926913

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926913
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480367
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA13030.27125093938592787No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG12270.25542970270647236No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11170.23253054435462883No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG11080.23065697685311437No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA10070.20963138600278539No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8700.1811115251463985No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7880.16404124346593335No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGA7540.15696332179354536No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6870.1430156526156043No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA6820.1419747817814296No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC6500.13531320844271152No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG6380.13281511844069224No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6270.13052520260550787No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC5830.12136553926477048No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5660.11782657842857648No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC5650.11761840426174155No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT5640.1174102300949066No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGC5450.11345492092504272No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG5410.11262222425770298No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5300.11033230842251861No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC5300.11033230842251861No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5060.10533612841848003No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4810.10013177424760653No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)