FastQCFastQC Report
Wed 31 May 2023
EGAF00007926914

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926914
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480367
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG29020.6041214321549981No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG13330.2774961643909761No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC11540.24023298852752167No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT11460.23856759519284212No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11310.23544498269031802No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT10150.21129677933746488No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8580.1786134351443792No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7920.16487394013327308No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACCAC7890.16424941763276826No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG7480.15571427679253572No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7230.15050992262166218No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG7070.14717913595230314No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT6750.14051756261358503No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6570.13677042761055608No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG6430.13385598927486692No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA6220.12948433177133317No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC5820.12115736509793554No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTCAC5670.11803475259541142No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT5440.1132467467582078No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC5320.1107486567561885No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5290.11012413425568368No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5120.10658517341948967No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5070.10554430258531498No Hit

[OK]Adapter Content

Adapter graph