FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459365
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12540.27298553437897966No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG10860.23641330967748958No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7820.17023499831288844No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6870.1495542760114506No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6600.14367659704156824No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5780.12582586831822187No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5680.12364895018122843No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5490.11951280572094086No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5350.11646512032915002No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5190.11298205130996049No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA4660.10144438518389516No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)